One of the capital ships ( I forget which and can't look it up right now ) has an ability to convert enemy ships to friendlies. While it is an interesting idea, the execution seems like it could be improved.
Here is my suggestion: replace the ability with one that creates a fighter squadron ( with the aesthetics of a group of Pelicans ) that can use the takeover ability. This makes the process more realistic, the squadron has a chance to be destroyed before taking control and can preform the takeover outside the capital's range.